Resources

Github

• Villablanca lab Github: https://github.com/ejvillablancaLab

Code and data exploration

• Spatiotemporal analysis reveals distinct inflammatory programs underlying chronic colitis:
  • Code
  • Explore scRNA-seq data: CD45Rbhi T cell transfer and Il10-/-.
• Liver X receptor unlinks intestinal regeneration and tumorigenesis
  • Code
• A versatile tissue-rolling technique for spatial-omics analyses of the entire murine gastrointestinal tract
  • Video summary
• B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing
  • Code
• The spatial transcriptomic landscape of the healing mouse intestine following damage
  • Repository to explore data
  • Code for analysis
  • Code for PROGENy
  • Data exploration video
• Conserved transcriptomic profile between mouse and human colitis allows unsupervised patient stratification
  • Code

Other resources

• Mouse intestine swiss roll step by step